dbCAN-seq: a database of CAZyme sequence and annotation

Gene clsuter ID: MGYG000004021_10|CGC1
Gene ID: MGYG000004021_01105
Location and strand information: 19643 - 21328 (-)
Family: 3.A.1.120.5
Protein type: TC
Protein description: Energy-dependent translational throttle protein EttA

Gene clsuter ID: MGYG000004021_10|CGC1
Gene ID: MGYG000004021_01106
Location and strand information: 21359 - 21922 (-)
Family: null
Protein type: null
Protein description: Peptide deformylase

Gene clsuter ID: MGYG000004021_10|CGC1
Gene ID: MGYG000004021_01107
Location and strand information: 21919 - 22347 (-)
Family: null
Protein type: null
Protein description: Putative pre-16S rRNA nuclease

Gene clsuter ID: MGYG000004021_10|CGC1
Gene ID: MGYG000004021_01108
Location and strand information: 22534 - 25641 (+)
Family: PL11_1|CBM2|PL11|CBM35
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 4.3137
Protein molecular weight: 113092.32
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004021_10|CGC1
Gene ID: MGYG000004021_01109
Location and strand information: 25902 - 28961 (+)
Family: PL11_1|CBM2|PL11|CBM35
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 4.4217
Protein molecular weight: 112929.22
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004021_10|CGC1
Gene ID: MGYG000004021_01110
Location and strand information: 29237 - 31447 (-)
Family: GH3
Protein type: CAZyme
Protein description: Beta-glucosidase BoGH3A
Protein isoelectric point: 6.2134
Protein molecular weight: 81334.24
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004021_10|CGC1
Gene ID: MGYG000004021_01111
Location and strand information: 31460 - 34333 (-)
Family: GH31
Protein type: CAZyme
Protein description: Alpha-xylosidase BoGH31A
Protein isoelectric point: 6.7422
Protein molecular weight: 109976.2
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004021_10|CGC1
Gene ID: MGYG000004021_01112
Location and strand information: 34519 - 34980 (+)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000004021_10|CGC1
Gene ID: MGYG000004021_01113
Location and strand information: 35056 - 36339 (+)
Family: 2.A.40.7.6
Protein type: TC
Protein description: Adenine permease AdeP

Gene clsuter ID: MGYG000004021_10|CGC1
Gene ID: MGYG000004021_01114
Location and strand information: 36360 - 36626 (+)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000004021_10|CGC1
Gene ID: MGYG000004021_01115
Location and strand information: 36635 - 37285 (+)
Family: null
Protein type: null
Protein description: Acetylxylan esterase

Gene clsuter ID: MGYG000004021_10|CGC1
Gene ID: MGYG000004021_01116
Location and strand information: 37295 - 38359 (+)
Family: GH43_19|GH43
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 7.0499
Protein molecular weight: 40993.48
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004021_10|CGC1
Gene ID: MGYG000004021_01117
Location and strand information: 38429 - 39325 (-)
Family: HTH_AraC
Protein type: TF
Protein description: HTH-type transcriptional activator RhaS

Gene clsuter ID: MGYG000004021_10|CGC1
Gene ID: MGYG000004021_01118
Location and strand information: 39721 - 40794 (+)
Family: 2.A.6.2.28
Protein type: TC
Protein description: Solvent efflux pump periplasmic linker SrpA

Gene clsuter ID: MGYG000004021_10|CGC1
Gene ID: MGYG000004021_01119
Location and strand information: 40809 - 43841 (+)
Family: 2.A.6.2.33
Protein type: TC
Protein description: Efflux pump membrane transporter BepE

Protein ID	eCAMI subfam	CAZyme substrate
MGYG000004021_01108	PL11_e0\|CBM35_e56\|CBM2_e72\|4.2.2.23	pectin
MGYG000004021_01109	PL11_e0\|CBM35_e56\|CBM2_e72\|4.2.2.23	pectin
MGYG000004021_01110	GH3_e134\|3.2.1.21	beta-glucan
MGYG000004021_01111	GH31_e72\|3.2.1.177	xyloglucan
MGYG000004021_01116	GH43_e71

You are here: cgc-> ?help

CGC gene composition diagram

Gene composition table

Substrate predicted by eCAMI subfamilies is pectin

Substrate predicted by dbCAN-PUL is pectin download this fig

Genomic location

Protein ID	Protein Name	Type	Start	End	Strand	Signature
MGYG000004021_01105	Energy-dependent translational throttle protein EttA	TC	19643	21328	-	3.A.1.120.5
MGYG000004021_01106	Peptide deformylase	null	21359	21922	-	Pep_deformylase
MGYG000004021_01107	Putative pre-16S rRNA nuclease	null	21919	22347	-	RuvX
MGYG000004021_01108	hypothetical protein	CAZyme	22534	25641	+	PL11_1\| CBM2\| PL11\| CBM35
MGYG000004021_01109	hypothetical protein	CAZyme	25902	28961	+	PL11_1\| CBM2\| PL11\| CBM35
MGYG000004021_01110	Beta-glucosidase BoGH3A	CAZyme	29237	31447	-	GH3
MGYG000004021_01111	Alpha-xylosidase BoGH31A	CAZyme	31460	34333	-	GH31
MGYG000004021_01112	hypothetical protein	null	34519	34980	+	SPOR
MGYG000004021_01113	Adenine permease AdeP	TC	35056	36339	+	2.A.40.7.6
MGYG000004021_01114	hypothetical protein	null	36360	36626	+	Acetyltransf_CG
MGYG000004021_01115	Acetylxylan esterase	null	36635	37285	+	Lipase_GDSL_2
MGYG000004021_01116	hypothetical protein	CAZyme	37295	38359	+	GH43_19\| GH43
MGYG000004021_01117	HTH-type transcriptional activator RhaS	TF	38429	39325	-	HTH_AraC
MGYG000004021_01118	Solvent efflux pump periplasmic linker SrpA	TC	39721	40794	+	2.A.6.2.28
MGYG000004021_01119	Efflux pump membrane transporter BepE	TC	40809	43841	+	2.A.6.2.33
Protein ID	Protein Name	Type	Start	End	Strand	Signature